Showing results 21 to 40 of 47
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| Issue Date | Title | Author(s) |
| 2023 | Genomic benchmarks : a collection of datasets for genomic sequence classification | Grešová, Katarína; Martinek, Vlastimil; Čechák, David; Šimeček, Petr; Alexiou, Panagiotis |
| 2015 | GenOO : a programming framework for High Throughput Sequencing analysis | Maragkakis, Manolis; Alexiou, Panagiotis; Mourelatos, Zissimos |
| 2023 | Hormone-regulated expansins : expression, localization, and cell wall biomechanics in Arabidopsis root growth | Samalova, Marketa; Melnikava, Alesia; Elsayad, Kareem; Peaucelle, Alexis; Gahurova, Evelina; Gumulec, Jaromir; Spyroglou, Ioannis; Zemlyanskaya, Elena V.; Ubogoeva, Elena V.; Balkova, Darina; Demko, Martin; Blavet, Nicolas; Alexiou, Panagiotis; Benes, Vladimir; Mouille, Gregory; Hejatko, Jan |
| 2013 | Identification of in vivo, conserved, TAF15 RNA binding sites reveals the impact of TAF15 on the neuronal transcriptome | Ibrahim, Fadia; Maragkakis, Manolis; Alexiou, Panagiotis; Maronski, Margaret A.; Dichter, Marc A.; Mourelatos, Zissimos |
| 2011 | In vivo profiling of hypoxic gene expression in gliomas using the hypoxia marker EF5 and laser-capture microdissection | Marotta, Diane; Karar, Jayashree; Jenkins, W. Timothy; Kumanova, Monika; Jenkins, Kevin W.; Tobias, John W.; Baldwin, Donald; Hatzigeorgiou, Artemis; Alexiou, Panagiotis; Evans, Sydney M.; Alarcon, Rodolfo; Maity, Amit; Koch, Cameron; Koumenis, Constantinos |
| 2017 | Kc167, a widely used Drosophila cell line, contains an active primary piRNA pathway | Vrettos, Nicholas; Maragkakis, Manolis; Alexiou, Panagiotis; Mourelatos, Zissimos |
| 2009 | Lost in translation : an assessment and perspective for computational microRNA target identification | Alexiou, Panagiotis; Maragkakis, Manolis; Papadopoulos, Giorgos L.; Reczko, Martin; Hatzigeorgiou, Artemis G. |
| 2014 | A MicroRNA precursor surveillance system in quality control of MicroRNA synthesis | Liu, Xuhang; Zheng, Qi; Vrettos, Nicholas; Maragkakis, Manolis; Alexiou, Panagiotis; Gregory, Brian D.; Mourelatos, Zissimos |
| 2012 | Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis | Vourekas, Anastassios; Zheng, Qi; Alexiou, Panagiotis; Maragkakis, Manolis; Kirino, Yohei; Gregory, Brian D.; Mourelatos, Zissimos |
| 2022 | miRBind : a deep learning method for miRNA binding classification | Klimentová, Eva; Hejret, Václav; Krčmář, Ján; Grešová, Katarína; Giassa, Ilektra-Chara; Alexiou, Panagiotis |
| 2010 | miRGen 2.0 : a database of microRNA genomic information and regulation | Alexiou, Panagiotis; Vergoulis, Thanasis; Gleditzsch, Martin; Prekas, George; Dalamagas, Theodore; Megraw, Molly; Grosse, Ivo; Sellis, Timos; Hatzigeorgiou, Artemis G. |
| 2013 | Mitochondrial protein BmPAPI modulates the length of mature piRNAs | Honda, Shozo; Kirino, Yoriko; Maragkakis, Manolis; Alexiou, Panagiotis; Ohtaki, Akashi; Murali, Ramachandran; Mourelatos, Zissimos; Kirino, Yohei |
| 2021 | Modulation of Aub–TDRD interactions elucidates piRNA amplification and germplasm formation | Vrettos, Nicholas; Maragkakis, Manolis; Alexiou, Panagiotis; Sgourdou, Paraskevi; Ibrahim, Fadia; Palmieri, Daniel; Kirino, Yohei; Mourelatos, Zissimos |
| 2023 | The MOV10 RNA helicase is a dosage-dependent host restriction factor for LINE1 retrotransposition in mice | Guan, Yongjuan; Gao, Hongyan; Leu, N. Adrian; Vourekas, Anastassios; Alexiou, Panagiotis; Maragkakis, Manolis; Kang, Zhenlong; Mourelatos, Zissimos; Liang, Guanxiang; Wang, P. Jeremy |
| 2020 | Multi-branch convolutional neural network for identification of small non-coding RNA genomic loci | Georgakilas, Georgios K.; Grioni, Andrea; Liakos, Konstantinos G.; Chalupova, Eliska; Plessas, Fotis C.; Alexiou, Panagiotis |
| 2011 | Online resources for microRNA analysis | Alexiou, Panagiotis; Maragkakis, Manolis; Hatzigeorgiou, Artemis G. |
| 2020 | PENGUINN : precise exploration of nuclear G-quadruplexes using interpretable neural networks | Klimentova, Eva; Polacek, Jakub; Simecek, Petr; Alexiou, Panagiotis |
| 2023 | RBP-Tar – a searchable database for experimental RBP binding sites | Gresova, Katarina; Racek, Tomas; Martinek, Vlastimil; Cechak, David; Svobodova, Radka; Alexiou, Panagiotis |
| 2018 | Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis | Ibrahim, Fadia; Maragkakis, Manolis; Alexiou, Panagiotis; Mourelatos, Zissimos |
| 2015 | The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing | Vourekas, Anastassios; Zheng, Ke; Fu, Qi; Maragkakis, Manolis; Alexiou, Panagiotis; Ma, Jing; Pillai, Ramesh S.; Mourelatos, Zissimos; Wang, P. Jeremy |
