| Issue Date | Title | Author(s) |
| 2009 | Accurate microRNA target prediction correlates with protein repression levels | Maragkakis, Manolis; Alexiou, Panagiotis; Papadopoulos, Giorgio L.; Reczko, Martin; Dalamagas, Theodore; Giannopoulos, George; Goumas, George; Koukis, Evangelos; Kourtis, Kornilios; Simossis, Victor A.; Sethupathy, Praveen; Vergoulis, Thanasis; Koziris, Nectarios; Sellis, Timos; Tsanakas, Panagiotis; Hatzigeorgiou, Artemis G. |
| 2023 | Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics | Martinek, Vlastimil; Martin, Jessica; Belair, Cedric; Payea, Matthew John; Malla, Sulochan; Alexiou, Panagiotis; Maragkakis, Manolis |
| 2010 | The DIANA-mirExTra web server : from gene expression data to microRNA function | Alexiou, Panagiotis; Maragkakis, Manolis; Papadopoulos, Giorgio L.; Simmosis, Victor A.; Zhang, Lin; Hatzigeorgiou, Artemis G. |
| 2010 | Drosophila SMN complex proteins Gemin2, Gemin3, and Gemin5 are components of U bodies | Cauchi, Ruben J.; Sanchez-Pulido, Luis; Liu, Ji-Long |
| 2012 | Functional microRNA targets in protein coding sequences | Reczko, Martin; Maragkakis, Manolis; Alexiou, Panagiotis; Grosse, Ivo; Hatzigeorgiou, Artemis G. |
| 2013 | FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns | Nakaya, Tadashi; Alexiou, Panagiotis; Maragkakis, Manolis; Chang, Alexandra; Mourelatos, Zissimos |
| 2013 | Identification of in vivo, conserved, TAF15 RNA binding sites reveals the impact of TAF15 on the neuronal transcriptome | Ibrahim, Fadia; Maragkakis, Manolis; Alexiou, Panagiotis; Maronski, Margaret A.; Dichter, Marc A.; Mourelatos, Zissimos |
| 2009 | Lost in translation : an assessment and perspective for computational microRNA target identification | Alexiou, Panagiotis; Maragkakis, Manolis; Papadopoulos, Giorgos L.; Reczko, Martin; Hatzigeorgiou, Artemis G. |
| 2010 | miRGen 2.0 : a database of microRNA genomic information and regulation | Alexiou, Panagiotis; Vergoulis, Thanasis; Gleditzsch, Martin; Prekas, George; Dalamagas, Theodore; Megraw, Molly; Grosse, Ivo; Sellis, Timos; Hatzigeorgiou, Artemis G. |
| 2023 | The MOV10 RNA helicase is a dosage-dependent host restriction factor for LINE1 retrotransposition in mice | Guan, Yongjuan; Gao, Hongyan; Leu, N. Adrian; Vourekas, Anastassios; Alexiou, Panagiotis; Maragkakis, Manolis; Kang, Zhenlong; Mourelatos, Zissimos; Liang, Guanxiang; Wang, P. Jeremy |
| 2020 | NEAT1 and paraspeckles in cancer development and chemoresistance | Pisani, Gabriel; Baron, Byron |
| 2014 | The Negative Elongation Factor Complex – a poorly understood multi-faceted transcript-processing complex | Baron, Byron |
| 2023 | RBP-Tar – a searchable database for experimental RBP binding sites | Gresova, Katarina; Racek, Tomas; Martinek, Vlastimil; Cechak, David; Svobodova, Radka; Alexiou, Panagiotis |
| 2023 | Transfer learning allows accurate RBP target site prediction with limited sample sizes | Vaculík, Ondřej; Chalupová, Eliška; Grešová, Katarína; Majtner, Tomáš; Alexiou, Panagiotis |
