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Browsing by Author Alexiou, Panagiotis

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Issue DateTitleAuthor(s)
2009Accurate microRNA target prediction correlates with protein repression levelsMaragkakis, Manolis; Alexiou, Panagiotis; Papadopoulos, Giorgio L.; Reczko, Martin; Dalamagas, Theodore; Giannopoulos, George; Goumas, George; Koukis, Evangelos; Kourtis, Kornilios; Simossis, Victor A.; Sethupathy, Praveen; Vergoulis, Thanasis; Koziris, Nectarios; Sellis, Timos; Tsanakas, Panagiotis; Hatzigeorgiou, Artemis G.
2012Accurate microRNA target prediction using detailed binding site accessibility and machine learning on proteomics dataReczko, Martin; Maragkakis, Manolis; Alexiou, Panagiotis; Papadopoulos, Giorgio L.; Hatzigeorgiou, Artemis G.
2023Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulationHejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis
2023Beyond microRNAs : analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulationHejret, Vaclav; Varadarajan, Nandan Mysore; Klimentova, Eva; Gresova, Katarina; Giassa, Ilektra-Chara; Vanacova, Stepanka; Alexiou, Panagiotis
2021Bioinformatics and machine learning approaches to understand the regulation of mobile genetic elementsGiassa, Ilektra-Chara; Alexiou, Panagiotis
2023CATSNAP : a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicingTimofeyenko, Ksenia; Kanavalau, Dzmitry; Alexiou, Panagiotis; Kalyna, Maria; Růžička, Kamil
2018cCLIP-seq : retrieval of chimeric reads from HITS-CLIP (CLIP-seq) librariesAlexiou, Panagiotis; Maragkakis, Manolis; Mourelatos, Zissimos; Vourekas, Anastassios
2020CDK9 activity is critical for maintaining MDM4 overexpression in tumor cellsŠtětková, Monika; Growková, Kateřina; Fojtík, Petr; Valčíková, Barbora; Palušová, Veronika; Verlande, Amandine; Jorda, Radek; Kryštof, Vladimír; Hejret, Václav; Alexiou, Panagiotis; Rotrekl, Vladimír; Uldrijan, Stjepan
2016CLIPSeqTools — a novel bioinformatics CLIP-seq analysis suiteMaragkakis, Manolis; Alexiou, Panagiotis; Nakaya, Tadashi; Mourelatos, Zissimos
2023Deep learning and direct sequencing of labeled RNA captures transcriptome dynamicsMartinek, Vlastimil; Martin, Jessica; Belair, Cedric; Payea, Matthew John; Malla, Sulochan; Alexiou, Panagiotis; Maragkakis, Manolis
2011Development of computational systems for the study of the expression and function of miRNAsAlexiou, Panagiotis
2009DIANA-microT web server : elucidating microRNA functions through target predictionMaragkakis, Manolis; Reczko, Martin; Simossis, Victor A.; Alexiou, Panagiotis; Papadopoulos, Giorgos L.; Dalamagas, Theodore; Giannopoulos, Giorgos; Goumas, G.; Koukis, Evangelos; Kourtis, Kornilios; Vergoulis, Thanasis; Koziris, Nectarios; Sellis, Timoleon; Tsanakas, Panayotis; Hatzigeorgiou, Artemis G.
2011DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease associationMaragkakis, Manolis; Vergoulis, Thanasis; Alexiou, Panagiotis; Reczko, Martin; Plomaritou, Kyriaki; Gousis, Mixail; Kourtis, Kornilios; Koziris, Nectarios; Dalamagas, Theodore; Hatzigeorgiou, Artemis G.
2010The DIANA-mirExTra web server : from gene expression data to microRNA functionAlexiou, Panagiotis; Maragkakis, Manolis; Papadopoulos, Giorgio L.; Simmosis, Victor A.; Zhang, Lin; Hatzigeorgiou, Artemis G.
2021DIANA-miRGen v4 : indexing promoters and regulators for more than 1500 microRNAsPerdikopanis, Nikos; Georgakilas, Georgios K.; Grigoriadis, Dimitris; Pierros, Vasilis; Kavakiotis, Ioannis; Alexiou, Panagiotis; Hatzigeorgiou, Artemis
2009DIANA-mirPath : integrating human and mouse microRNAs in pathwaysPapadopoulos, Giorgos L.; Alexiou, Panagiotis; Maragkakis, Manolis; Reczko, Martin; Hatzigeorgiou, Artemis G.
2022ENNGene : an Easy Neural Network model building tool for GenomicsChalupová, Eliška; Vaculík, Ondřej; Poláček, Jakub; Jozefov, Filip; Majtner, Tomáš; Alexiou, Panagiotis
2022Fine-tuning transformers for genomic tasksMartinek, Vlastimil; Cechak, David; Gresova, Katarina; Alexiou, Panagiotis; Simecek, Petr
2012Functional microRNA targets in protein coding sequencesReczko, Martin; Maragkakis, Manolis; Alexiou, Panagiotis; Grosse, Ivo; Hatzigeorgiou, Artemis G.
2013FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved intronsNakaya, Tadashi; Alexiou, Panagiotis; Maragkakis, Manolis; Chang, Alexandra; Mourelatos, Zissimos
Showing results 1 to 20 of 47  next >